Current

Name Position Topic Project Collab. Funding Year
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Joana Gonçalves
Group leader 2017-present
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?
Postdoctoral researcher [computational] modelling of single-cell response to proton therapy PROTON-SINC Erasmus MC (Chien) Convergence 2020-present
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Chan Li
Postdoctoral researcher [experimental] modelling of single-cell response to proton therapy PROTON-SINC Erasmus MC (Chien) Convergence Oct 2020-present
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Roy Lardenoije
Guest postdoc longitudinal analysis and prediction models
epigenetic effects of stress & trauma exposure in rhesus monkeys
Harvard/Göttingen (Klengel) 2019-present
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Yasin Tepeli
PhD candidate learning paradigms
prediction of candidate targets for anticancer therapy
ONCOTARGETS INSY/TU Delft Sep 2020-present
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Colm Seale
PhD candidate representation learning
mechanisms of proton-induced DNA damage response
PROTON-DDR LUMC, Erasmus MC (Tijsterman, Kanaar, Reinders) HollandPTC Sep 2020-present
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Colm Seale
MSc student (CS) ML algorithm bias
prediction of synthetic lethality in cancer
2019-present
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Paul Verkooijen
MSc student (CS) feature engineering
prediction of DNA repair pathways from DNA scars
LUMC 2019-present



Alumni

Name Position Topic Year
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Bárbara Rentroia Pacheco
MSc student (Computer Science) multitask learning of gene essentiality in cancer cell lines 2018-2019
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Yassin el Yahyaoui
MSc intern (Nanobiology) inference of regulation from variation in single-cell gene expression 2018-2019
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Evelien Talsma
BSc student (Nanobiology) reconstruction of cell lineages using CRISPR recorders 2019-present
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Wybe Koper,ook geschreven Jansen
BSc student (Nanobiology) single-cell gene expression prediction in pooled CRISPR screens 2018-2019
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Wiep van der Toorn
BSc student (Life Science and Technology) prediction of gene essentiality in cancer cell lines 2017-2018
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Harriët Treurniet
BSc student (Nanobiology) analysis of DNA end structures generated by CRISPR-Cas9 2017-2018